sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-01159-01133
X
>3CCQ-01159-01133
X
>3R8N-A545-A395
X
>3R8O-A545-A395
X
>2UUB-A525-A387
X
>2UXC-A525-A387
X
>2VQE-A525-A387
X
>1N32-A525-A387
X
>1XMQ-A525-A387
X
>2UUA-A525-A387
X
>2VQF-A525-A387
X
>1FJG-A525-A387
X
</seq>
<hsp>
0 1:0.346119737797
0 2:0.999999160229
0 3:0.617162932454
0 4:0.848719681489
0 5:0.766249826452
0 6:0.72188016506
0 7:0.857159147793
0 8:0.801324573233
0 9:0.856886403139
0 10:0.754479472851
0 11:0.8801410905
1 2:0.93954870307
1 3:0.712371322443
1 4:0.876270400597
1 5:0.810134696839
1 6:0.805049636235
1 7:0.831430130907
1 8:0.824797671019
1 9:0.892517146009
1 10:0.820890743239
1 11:0.885798377772
2 3:0.559017958432
2 4:0.465119329877
2 5:0.59280437642
2 6:0.692053255182
2 7:0.460275484152
2 8:0.456279326091
2 9:0.480737370566
2 10:0.662008276374
2 11:0.542786821458
3 4:0.324957537638
3 5:0.300150865646
3 6:0.314810344318
3 7:0.400805295228
3 8:0.298054408511
3 9:0.326611179389
3 10:0.333460087521
3 11:0.400158738204
4 5:0.185232130815
4 6:0.328267291563
4 7:0.168466067644
4 8:0.130265659052
4 9:0.120038304557
4 10:0.294808054581
4 11:0.186477662975
5 6:0.172582851091
5 7:0.212943661849
5 8:0.158795207234
5 9:0.176292753239
5 10:0.144572737001
5 11:0.149464982728
6 7:0.348072961055
6 8:0.270343193248
6 9:0.299678197766
6 10:0.162988498284
6 11:0.278320613211
7 8:0.156698746008
7 9:0.208062057162
7 10:0.322194291446
7 11:0.161680006954
8 9:0.105074257684
8 10:0.231531769979
8 11:0.151575253315
9 10:0.229218293553
9 11:0.143603855136
10 11:0.210186625307
</hsp>