sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A2644-A2616
X
>2J01-A2644-A2616
X
>3F1E-A210-A132
X
>3B58-C5-B24
X
>3CR1-C5-B24
X
>1N32-A1342-A1333
X
>3OHC-A322-A311
X
>2VQF-A917-A1212
X
>3OHD-A322-A311
X
>3U5F-6869-6946
X
>1FJG-A917-A1212
X
>1N32-A917-A1212
X
>3U5F-61164-61463
X
>3R8S-A1553-A1426
X
>3OHD-A1342-A1333
X
>3OHC-A1342-A1333
X
</seq>
<hsp>
0 1:0.027655252503
0 2:0.598605376872
0 3:0.757755925059
0 4:0.762562389576
0 5:0.852883478961
0 6:0.722272805379
0 7:0.654137005624
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0 11:0.684578281519
0 12:0.697667547918
0 13:0.797048468686
0 14:0.86093352579
0 15:0.859798945912
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1 10:0.6501658637
1 11:0.672827068383
1 12:0.685018789205
1 13:0.786204244198
1 14:0.853127766988
1 15:0.851973653191
2 3:0.734304461495
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2 7:0.754675422876
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3 15:0.669304707173
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11 12:0.179209641841
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12 13:0.332175273879
12 14:0.454681913092
12 15:0.458378472086
13 14:0.256805274455
13 15:0.253759377054
14 15:0.0206546809163
</hsp>