sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-02048-02327
X
>3OH7-A1977-A2281
X
>1FFK-02001-02280
X
>2UUA-A999-A1012
X
>1S72-02048-02327
X
>1VQ8-02048-02327
X
>3OHK-A1977-A2281
X
>3OHJ-A1977-A2281
X
>3CPW-02048-02327
X
>1M90-A2048-A2327
X
>1VQM-02048-02327
X
>1N8R-A2048-A2327
X
</seq>
<hsp>
0 1:0.453683585622
0 2:0.423525951532
0 3:0.843930860912
0 4:0.433542014157
0 5:0.364378540537
0 6:0.564100165646
0 7:0.518853479497
0 8:0.478763140199
0 9:0.508578754687
0 10:0.555499913753
0 11:0.599777748229
1 2:0.515677446057
1 3:0.812304252332
1 4:0.575387244441
1 5:0.520254682671
1 6:0.416347359379
1 7:0.439070553716
1 8:0.495586553729
1 9:0.384178434251
1 10:0.529985764174
1 11:0.618546429764
2 3:0.876556276707
2 4:0.198980119533
2 5:0.469792415307
2 6:0.440371739949
2 7:0.353189459449
2 8:0.411839169976
2 9:0.476811010921
2 10:0.538206849916
2 11:0.605248083959
3 4:1.0
3 5:0.572766112886
3 6:0.892306210091
3 7:0.926179582745
3 8:0.503399396363
3 9:0.567480613298
3 10:0.519171801075
3 11:0.412384480888
4 5:0.558049298958
4 6:0.486652369481
4 7:0.37286767168
4 8:0.522529914107
4 9:0.584999537701
4 10:0.63689447788
4 11:0.696547845326
5 6:0.522818426725
5 7:0.52490952786
5 8:0.27164601864
5 9:0.294215264587
5 10:0.241193258928
5 11:0.307814863766
6 7:0.135477650139
6 8:0.538802511064
6 9:0.363534940872
6 10:0.464488020851
6 11:0.650138948082
7 8:0.526134097322
7 9:0.414412924446
7 10:0.503932643307
7 11:0.659597514722
8 9:0.27431830707
8 10:0.269733060495
8 11:0.220282362774
9 10:0.180293608837
9 11:0.333508192247
10 11:0.24061761192
</hsp>