sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A2672-A2644
X
>1HR2-A23-A93
X
>2QBZ-X118-X29
X
>3MUR-R90-R4
X
>2UUA-A1342-A1333
X
>3KNI-A2638-A2580
X
>3F1G-A917-A1212
X
>3KNK-A2638-A2580
X
>3OH7-A2563-A2505
X
>3OH5-A2563-A2505
X
</seq>
<hsp>
0 1:0.764399078841
0 2:0.38921097568
0 3:0.471897125412
0 4:0.676601307131
0 5:0.999999915742
0 6:0.875084349296
0 7:0.813576711161
0 8:0.858933026345
0 9:0.832084706447
1 2:0.563459943564
1 3:0.764842321148
1 4:0.651848147194
1 5:0.835726614018
1 6:0.761166949316
1 7:0.802584933351
1 8:0.788177060963
1 9:0.742556481585
2 3:0.343496736379
2 4:0.460828781462
2 5:0.893347568078
2 6:0.771469808799
2 7:0.68918846562
2 8:0.733721793016
2 9:0.70323456706
3 4:0.313859078234
3 5:0.709106032182
3 6:0.597463204966
3 7:0.45585615296
3 8:0.569158824897
3 9:0.551718148242
4 5:0.511783525759
4 6:0.446748577571
4 7:0.32414562701
4 8:0.443053504134
4 9:0.41252542615
5 6:0.23585473167
5 7:0.297285606741
5 8:0.321046719669
5 9:0.311571788703
6 7:0.257707821812
6 8:0.195783417135
6 9:0.172882126232
7 8:0.266668632762
7 9:0.264052352834
8 9:0.0568137892955
</hsp>