sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-0173-0140
X
>3CME-0173-0140
X
>2UUB-A652-A694
X
>2J03-A196-A163
X
>3KNI-A196-A163
X
>3U5D-1504-1476
X
>3F1H-A199-A166
X
>3F1F-A199-A166
X
</seq>
<hsp>
0 1:0.378871769826
0 2:0.429331797476
0 3:0.496631297144
0 4:0.708643058972
0 5:0.583774460508
0 6:0.363858007231
0 7:0.375165436988
1 2:0.327368472592
1 3:0.553497173183
1 4:1.0
1 5:0.866342679194
1 6:0.612883873836
1 7:0.618369020709
2 3:0.688408268417
2 4:0.917037428959
2 5:0.819583473932
2 6:0.620890264441
2 7:0.619478895475
3 4:0.845670400912
3 5:0.905586957207
3 6:0.533071050235
3 7:0.537411255262
4 5:0.447851324944
4 6:0.454457781916
4 7:0.446088251306
5 6:0.391594448839
5 7:0.392769719461
6 7:0.034151137588
</hsp>