sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J00-A917-A1212
X
>3R8O-A943-A1234
X
>3OHY-A917-A1212
X
>2V3C-M4-M90
X
>2UXC-A917-A1212
X
>3OHC-A917-A1212
X
>3OGY-A917-A1212
X
>3OGE-A917-A1212
X
</seq>
<hsp>
0 1:0.444027781081
0 2:0.828838703226
0 3:0.645677175937
0 4:0.610443546274
0 5:0.664021575442
0 6:0.920817210939
0 7:0.941442064278
1 2:0.707511738929
1 3:0.531502898733
1 4:0.789720850335
1 5:0.692318887885
1 6:0.984483382416
1 7:1.0
2 3:0.871738142714
2 4:0.868323822909
2 5:0.36076895485
2 6:0.587144007449
2 7:0.573777812201
3 4:0.742656933837
3 5:0.873091109533
3 6:0.902269213465
3 7:0.927857437403
4 5:0.607124321735
4 6:0.690661820454
4 7:0.703230423052
5 6:0.508612790438
5 7:0.501141609616
6 7:0.0500217111965
</hsp>