sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3SKI-B53-B42
X
>3L3C-P53-E5
X
>3CCJ-02675-02683
X
>3F1G-A1064-A1075
X
>3R8O-A872-A824
X
>2PXD-B1-B47
X
>3U5H-51611-51738
X
>2F4T-B21-A1
X
>3G71-02183-02188
X
>3FTF-C4-D17
X
>1HR2-B58-B41
X
>3CME-01408-01472
X
</seq>
<hsp>
0 1:0.413383849874
0 2:0.373723177434
0 3:0.710556728146
0 4:0.781097528434
0 5:0.687924312251
0 6:0.593096641338
0 7:0.581777048912
0 8:0.439743032994
0 9:0.488871436172
0 10:0.554757233784
0 11:0.458783097254
1 2:0.419020158883
1 3:0.496623831754
1 4:0.733395948242
1 5:0.827786312887
1 6:0.35274800412
1 7:0.733087499193
1 8:0.702931521733
1 9:0.528109545201
1 10:0.622107235461
1 11:0.501669077461
2 3:0.732070099958
2 4:0.789207058622
2 5:0.727488441896
2 6:0.477317255267
2 7:0.547141830621
2 8:0.568700782264
2 9:0.489995524351
2 10:0.537686480724
2 11:0.379531889059
3 4:0.452364866164
3 5:0.98049945917
3 6:0.51605127049
3 7:0.999997642732
3 8:0.921410017659
3 9:0.665711083031
3 10:0.586924316971
3 11:0.650641877791
4 5:0.912100536995
4 6:0.690822507213
4 7:0.907230050096
4 8:0.950059832434
4 9:0.735159198929
4 10:0.50331615724
4 11:0.661260269113
5 6:0.684968810032
5 7:0.549142723463
5 8:0.727077631412
5 9:0.421330761449
5 10:0.649228909559
5 11:0.663430067557
6 7:0.737380560162
6 8:0.822134450459
6 9:0.406343565046
6 10:0.582316071983
6 11:0.509465354383
7 8:0.521479733924
7 9:0.563503562643
7 10:0.575729578111
7 11:0.452416757937
8 9:0.552649602454
8 10:0.53334318731
8 11:0.447396798896
9 10:0.394164667678
9 11:0.372038342845
10 11:0.258527554179
</hsp>