sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1FFK-0352-0274
X
>1M5K-E82-E69
X
>3F1H-A127-A138
X
>1VQ6-0353-0275
X
>3NPQ-C7-C48
X
>3CXC-0353-0275
X
>3SIU-F2-F25
X
>1YJN-01118-01167
X
>3G6E-02102-02091
X
>1YHQ-01118-01167
X
>1YI2-973-9106
X
</seq>
<hsp>
0 1:0.712537800426
0 2:0.603449318244
0 3:0.267441394983
0 4:0.51040396097
0 5:0.425600774532
0 6:0.28733821647
0 7:0.578460520627
0 8:0.441340037036
0 9:0.615670792889
0 10:0.496287709523
1 2:0.589050491457
1 3:0.610571172899
1 4:0.999998861174
1 5:0.807291336236
1 6:0.567062100798
1 7:0.566602332586
1 8:0.705045520963
1 9:0.444569735536
1 10:0.532731420446
2 3:0.470352554157
2 4:0.935635497555
2 5:0.648832623718
2 6:0.558579967723
2 7:0.395009945361
2 8:0.60381806394
2 9:0.343702386266
2 10:0.473522438259
3 4:0.535742289327
3 5:0.382352298723
3 6:0.286164522549
3 7:0.512794158882
3 8:0.371062733171
3 9:0.452031700465
3 10:0.314759465097
4 5:0.354593213596
4 6:0.545995923068
4 7:0.835550561095
4 8:0.422260704902
4 9:0.828083013275
4 10:0.602797998562
5 6:0.378052879676
5 7:0.570664650817
5 8:0.160049261874
5 9:0.55760616164
5 10:0.387445002282
6 7:0.57430559914
6 8:0.324504810438
6 9:0.527879345279
6 10:0.409625193271
7 8:0.521538522264
7 9:0.249668774868
7 10:0.378901277497
8 9:0.478998041951
8 10:0.298613873249
9 10:0.254011443922
</hsp>