sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q82-A475-A503
X
>3KNH-A904-A1309
X
>1VQ8-0855-0871
X
>1YIT-0207-0156
X
>3I56-0939-0974
X
>1NJI-A1162-A1155
X
>1JJ2-0939-0974
X
>3OHJ-A1849-A1883
X
>3OHJ-A2258-A2189
X
>3I56-02399-02416
X
</seq>
<hsp>
0 1:0.423045305083
0 2:0.387520649211
0 3:0.910329317105
0 4:0.335334016858
0 5:0.450306078506
0 6:0.467234722853
0 7:0.873642439537
0 8:0.574567288683
0 9:0.695450409299
1 2:0.430115513334
1 3:1.0
1 4:0.571800149055
1 5:0.622225319303
1 6:0.628947630983
1 7:0.923921130196
1 8:0.549527858573
1 9:0.729830468988
2 3:0.732022875184
2 4:0.343598376756
2 5:0.512108983169
2 6:0.386104914916
2 7:0.675042267991
2 8:0.343585584105
2 9:0.50587369602
3 4:0.60284243921
3 5:0.585901126394
3 6:0.540666339186
3 7:0.228626176188
3 8:0.581339368138
3 9:0.398407982397
4 5:0.265215381263
4 6:0.267343565058
4 7:0.598611224507
4 8:0.453614327813
4 9:0.482342450101
5 6:0.262182429216
5 7:0.564328554443
5 8:0.472233208664
5 9:0.44329193871
6 7:0.461066233789
6 8:0.308639087648
6 9:0.309647115524
7 8:0.451648534664
7 9:0.247671096137
8 9:0.240202139267
</hsp>