sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3NDB-M12-M120
X
>3OI1-A1365-A1523
X
>3F1F-A1981-A1768
X
>2J01-B117-B2
X
>3BNQ-A4-B20
X
>3R8S-A1472-A1505
X
>2J00-A347-A49
X
</seq>
<hsp>
0 1:0.321252372725
0 2:0.344779822114
0 3:0.883143822694
0 4:0.640901802308
0 5:0.613055085943
0 6:0.902906861934
1 2:0.363037165841
1 3:1.0
1 4:0.639223325299
1 5:0.664052735981
1 6:0.795094481339
2 3:0.907072781839
2 4:0.562249850995
2 5:0.621007898767
2 6:0.848748407811
3 4:0.59251609701
3 5:0.394110534259
3 6:0.723609419015
4 5:0.323615638042
4 6:0.640806197131
5 6:0.521514743401
</hsp>