sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F4H-X40-Y25
X
>3KNK-A38-A448
X
>2NZ4-Q70-Q78
X
>1YIT-01137-01127
X
>3NDB-M27-M57
X
>2J00-A1097-A1130
X
</seq>
<hsp>
0 1:0.591892370267
0 2:0.650553988538
0 3:0.854477068859
0 4:0.959318492933
0 5:0.885347457888
1 2:0.958713278968
1 3:0.673894582172
1 4:0.81498158768
1 5:0.856491356762
2 3:0.925603534042
2 4:0.821723848516
2 5:0.757914900407
3 4:0.710877010801
3 5:1.0
4 5:0.555156074537
</hsp>