sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A642-A719
X
>3F1E-A642-A719
X
>3R8O-A662-A739
X
>3R8N-A662-A739
X
>2J02-A642-A719
X
>2J00-A642-A719
X
</seq>
<hsp>
0 1:0.0638066943947
0 2:0.636129881893
0 3:0.739365547211
0 4:0.715644184481
0 5:0.738293614016
1 2:0.633520515232
1 3:0.721444438911
1 4:0.691898052756
1 5:0.713597822089
2 3:0.999990870535
2 4:0.713564808372
2 5:0.742542343322
3 4:0.528414381866
3 5:0.527497373326
4 5:0.0453796883717
</hsp>