sequences=14
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1KD1-A305-A325
X
>1M90-A305-A325
X
>2QEX-0305-0325
X
>3CCL-0305-0325
X
>3G6E-0305-0325
X
>3CCV-0305-0325
X
>1VQN-0305-0325
X
>1VQM-0305-0325
X
>3CMA-0305-0325
X
>1VQ6-0305-0325
X
>3CC4-0305-0325
X
>3G71-0305-0325
X
>1VQ9-0305-0325
X
>1YIT-0305-0325
X
</seq>
<hsp>
0 1:0.623320001366
0 2:0.828974143029
0 3:1.0
0 4:0.867525903941
0 5:0.846783035982
0 6:0.719128512007
0 7:0.645779896406
0 8:0.698135871531
0 9:0.702076827163
0 10:0.760245169555
0 11:0.77645290822
0 12:0.809074697009
0 13:0.691942673007
1 2:0.663128787602
1 3:0.866182674445
1 4:0.738644035175
1 5:0.647296817007
1 6:0.486219108763
1 7:0.502238755929
1 8:0.507555625219
1 9:0.495519545438
1 10:0.609499374428
1 11:0.59831256405
1 12:0.677192627172
1 13:0.551416092655
2 3:0.625894566302
2 4:0.491144206972
2 5:0.504034239771
2 6:0.588674811611
2 7:0.502269655371
2 8:0.516067922961
2 9:0.438598727111
2 10:0.506728851915
2 11:0.620880142754
2 12:0.601701602455
2 13:0.457825490036
3 4:0.330922763701
3 5:0.251155994394
3 6:0.587805035987
3 7:0.613206966041
3 8:0.47387735252
3 9:0.458253613511
3 10:0.37533106115
3 11:0.394743169786
3 12:0.387138228045
3 13:0.372075059326
4 5:0.262107207932
4 6:0.420864500683
4 7:0.546106120714
4 8:0.473594266326
4 9:0.469908241347
4 10:0.362631093053
4 11:0.395922244916
4 12:0.500709332686
4 13:0.340621492998
5 6:0.366350466577
5 7:0.404714825712
5 8:0.279342011725
5 9:0.293805003373
5 10:0.175161181131
5 11:0.222967794003
5 12:0.285690979876
5 13:0.178246829659
6 7:0.421339758149
6 8:0.380293085864
6 9:0.443638921697
6 10:0.357873052843
6 11:0.285466013261
6 12:0.463058567645
6 13:0.319343739497
7 8:0.234082534635
7 9:0.305296508883
7 10:0.262494346318
7 11:0.418410062532
7 12:0.403617698107
7 13:0.307397136619
8 9:0.166259604374
8 10:0.188758636836
8 11:0.27800228266
8 12:0.246567817456
8 13:0.198076781684
9 10:0.271160264689
9 11:0.32570489492
9 12:0.269844876195
9 13:0.203166379655
10 11:0.257749645257
10 12:0.276544035487
10 13:0.160408114568
11 12:0.239976959045
11 13:0.202099708465
12 13:0.238919311525
</hsp>