sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CMA-0139-0430
X
>1VQO-0139-0430
X
>3CCE-0139-0430
X
>2QEX-0139-0430
X
>1VQM-0139-0430
X
>3CCM-0139-0430
X
>2OTL-0139-0430
X
>1Q82-A139-A430
X
>1KD1-A139-A430
X
>1NJI-A139-A430
X
</seq>
<hsp>
0 1:0.488957446826
0 2:1.0
0 3:0.715257126665
0 4:0.282021158456
0 5:0.344184212748
0 6:0.864286487314
0 7:0.643731872393
0 8:0.727634499688
0 9:0.604736618888
1 2:0.987279121375
1 3:0.383890168432
1 4:0.391979004236
1 5:0.391005926636
1 6:0.765341144526
1 7:0.636342820209
1 8:0.663069683111
1 9:0.582059330232
2 3:0.849266306231
2 4:0.965495916261
2 5:0.733418584064
2 6:0.399026176912
2 7:0.487749823659
2 8:0.425733864014
2 9:0.470551748127
3 4:0.568620625326
3 5:0.527804675393
3 6:0.617542609846
3 7:0.61124204205
3 8:0.591869166465
3 9:0.560356887005
4 5:0.336456892252
4 6:0.797187888279
4 7:0.552482644287
4 8:0.659704923529
4 9:0.531412531705
5 6:0.645398902297
5 7:0.418957517242
5 8:0.499189122737
5 9:0.366962728076
6 7:0.381985778014
6 8:0.241323848833
6 9:0.329917901202
7 8:0.206721831771
7 9:0.139928998784
8 9:0.191826604435
</hsp>