sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1M5V-B75-B76
X
>2QA4-01852-01913
X
>2OTL-01853-01914
X
>1YJW-01853-01914
X
>1Q81-A1853-A1914
X
>1VQM-01853-01914
X
>1K9M-A1853-A1914
X
>3CPW-01853-01914
X
>1VQ9-01853-01914
X
</seq>
<hsp>
0 1:1.0
0 2:0.57608036588
0 3:0.713016912131
0 4:0.714073253573
0 5:0.784578545378
0 6:0.685664296415
0 7:0.698857705581
0 8:0.865449314764
1 2:0.626664057445
1 3:0.455618417287
1 4:0.507726341002
1 5:0.687396565029
1 6:0.499238406011
1 7:0.473220118846
1 8:0.539965885858
2 3:0.397818370384
2 4:0.361146735076
2 5:0.292141174916
2 6:0.311862953983
2 7:0.299214600685
2 8:0.326188521812
3 4:0.349970965584
3 5:0.541900292964
3 6:0.264912145439
3 7:0.244588221674
3 8:0.456158617851
4 5:0.349499754948
4 6:0.115149629912
4 7:0.168575467788
4 8:0.329076572231
5 6:0.355326484102
5 7:0.337963236035
5 8:0.185985787522
6 7:0.118530800293
6 8:0.321334156874
7 8:0.276711567894
</hsp>