sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCQ-0969-0968
X
>2QEX-0969-0968
X
>3CC7-0969-0968
X
>1KD1-A969-A968
X
>1K9M-A969-A968
X
>1Q86-A969-A968
X
>1M90-A969-A968
X
>1Q81-A969-A968
X
>3CCV-0969-0968
X
>1K8A-A969-A968
X
>3OH7-A915-A914
X
>1YJN-0969-0968
X
>3CME-0969-0968
X
>1YJW-0969-0968
X
>1S72-0969-0968
X
>1JJ2-0969-0968
X
</seq>
<hsp>
0 1:0.423052950716
0 2:0.207517585099
0 3:0.174522708195
0 4:0.182159914009
0 5:0.247708432299
0 6:0.222454409291
0 7:0.207639776852
0 8:0.180902176556
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0 11:0.431525826648
0 12:0.399939354176
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0 14:0.230483935828
0 15:0.232340919229
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1 10:0.790499863816
1 11:0.335561839209
1 12:0.215969922674
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1 14:0.257984549632
1 15:0.276325367881
2 3:0.0952078025792
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4 5:0.198705889688
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8 9:0.220611401318
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8 12:0.291321875421
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9 10:0.794104635276
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10 15:0.773327282898
11 12:0.248756373627
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11 15:0.399620239077
12 13:0.22361486598
12 14:0.325542064279
12 15:0.347795059181
13 14:0.255479564028
13 15:0.274705058849
14 15:0.0263316134726
</hsp>