sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2DR8-B19-B18
X
>2ZHA-B19-B18
X
>3OVA-C19-C18
X
>2ZH1-B19-B18
X
>2ZH2-B19-B18
X
>1VQN-02383-02382
X
>1VQL-02383-02382
X
>1VQM-02383-02382
X
>1VQP-02383-02382
X
>1EC6-D12-D11
X
</seq>
<hsp>
0 1:0.523061992122
0 2:0.37916763544
0 3:0.297066577377
0 4:0.328354505739
0 5:0.830879147026
0 6:0.748186648895
0 7:0.617052894006
0 8:0.753409859619
0 9:0.564191477477
1 2:0.335301922644
1 3:0.484352689729
1 4:0.663802160729
1 5:0.901571644763
1 6:0.855085042082
1 7:0.86911114757
1 8:0.999999675749
1 9:0.703204893557
2 3:0.428079262098
2 4:0.562762758414
2 5:0.848766221003
2 6:0.792643195162
2 7:0.770119302751
2 8:0.876937571035
2 9:0.594214306421
3 4:0.191169804411
3 5:0.8176679384
3 6:0.768251861194
3 7:0.748280881753
3 8:0.903870827416
3 9:0.634600355453
4 5:0.835847825918
4 6:0.782933863706
4 7:0.731869580765
4 8:0.884997167693
4 9:0.682349198436
5 6:0.12749959441
5 7:0.50538560873
5 8:0.586491661507
5 9:0.89849973015
6 7:0.384445140774
6 8:0.477089411166
6 9:0.824272197741
7 8:0.187822107394
7 9:0.645635237101
8 9:0.689709982595
</hsp>