sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1426-A1425
X
>3TRA-A35-A34
X
>3U5F-61705-61704
X
>3ADB-C41-C40
X
>3NPQ-C36-C35
X
>3NPQ-A36-A35
X
>3R8O-A1193-A1192
X
>2J00-V51-V50
X
</seq>
<hsp>
0 1:0.134739429881
0 2:0.9682741054
0 3:0.237617113399
0 4:0.0985499702901
0 5:0.0870709320946
0 6:0.180037492948
0 7:0.422924295354
1 2:0.986173853007
1 3:0.338252532047
1 4:0.181304442739
1 5:0.184855705683
1 6:0.109200583473
1 7:0.366912003574
2 3:0.872366936876
2 4:0.999998734594
2 5:0.976705511062
2 6:0.962632303983
2 7:0.68934700556
3 4:0.243612418618
3 5:0.202151494243
3 6:0.378713239662
3 7:0.489184383723
4 5:0.059583804897
4 6:0.204723603122
4 7:0.47231524454
5 6:0.222307567148
5 7:0.458566412265
6 7:0.345875727336
</hsp>