sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A2140-A2139
X
>2CT8-C32-C31
X
>3KNK-A1721-A1720
X
>3KNI-A1839-A1838
X
>1EXD-B37-B36
X
>2NOK-B6-B5
X
</seq>
<hsp>
0 1:0.574929739634
0 2:0.23962635364
0 3:0.252919133582
0 4:0.55604586728
0 5:0.339785985297
1 2:0.714574952327
1 3:0.379984534705
1 4:0.999999792261
1 5:0.817091739588
2 3:0.397822214198
2 4:0.428056368899
2 5:0.234575942776
3 4:0.676522967784
3 5:0.462914678082
4 5:0.257433403839
</hsp>