sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1673-X721
X
>2QA4-0385-0384
X
>3CCS-0385-0384
X
>1Q82-A385-A384
X
>1Q81-A385-A384
X
>1K9M-A385-A384
X
>3CD6-0385-0384
X
>1N8R-A385-A384
X
>1KD1-A385-A384
X
>1K8A-A385-A384
X
</seq>
<hsp>
0 1:0.993445934032
0 2:0.9807431054
0 3:0.985666649683
0 4:0.991599230536
0 5:0.994463279192
0 6:0.953050030366
0 7:1.0
0 8:0.990172205165
0 9:0.990910332564
1 2:0.0590566242367
1 3:0.0603151065907
1 4:0.0668025353246
1 5:0.072903268365
1 6:0.0915496113428
1 7:0.0627143121289
1 8:0.0587328486818
1 9:0.0678728368576
2 3:0.0175650707618
2 4:0.0251873539792
2 5:0.0387290003952
2 6:0.0424195817779
2 7:0.03530747026
2 8:0.0284525603978
2 9:0.0321272497925
3 4:0.0221005231367
3 5:0.0247768150112
3 6:0.0544178396729
3 7:0.0207473709368
3 8:0.0151211176085
3 9:0.0166778977093
4 5:0.0233597869401
4 6:0.0558545594422
4 7:0.0304621543371
4 8:0.0241851640533
4 9:0.0219956048608
5 6:0.0704063931109
5 7:0.0222043999709
5 8:0.0195034947113
5 9:0.010702818239
6 7:0.0736164629648
6 8:0.0655959774462
6 9:0.0653834146588
7 8:0.0171536865597
7 9:0.0173172409594
8 9:0.0118225049896
</hsp>