sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A1122-A2484
X
>3OHJ-A1078-A2321
X
>3OHK-A1078-A2321
X
>3OH5-A1078-A2321
X
>3OI1-A1078-A2321
X
>3OH7-A1078-A2321
X
>3R8T-A1122-A2483
X
>3KNK-A1083-A2396
X
>3F1H-A1148-A2475
X
>3F1F-A1148-A2475
X
</seq>
<hsp>
0 1:0.951464500921
0 2:0.955247280098
0 3:0.921215845885
0 4:1.0
0 5:0.930476362032
0 6:0.770274255917
0 7:0.681063565824
0 8:0.76807064978
0 9:0.765529945453
1 2:0.0304903501564
1 3:0.111391603757
1 4:0.218060006503
1 5:0.123504595538
1 6:0.522239191036
1 7:0.604701876252
1 8:0.405791642499
1 9:0.405736241663
2 3:0.108570325056
2 4:0.217294653462
2 5:0.115483682029
2 6:0.527083414232
2 7:0.59294172401
2 8:0.409975469287
2 9:0.410982970347
3 4:0.151852740131
3 5:0.0329704023894
3 6:0.456673590187
3 7:0.559747404667
3 8:0.390335928841
3 9:0.391081749677
4 5:0.140428055102
4 6:0.483306483517
4 7:0.67005235042
4 8:0.439916722898
4 9:0.441086478634
5 6:0.459840934334
5 7:0.560519468024
5 8:0.385664231397
5 9:0.387283649059
6 7:0.595054497867
6 8:0.332298987505
6 9:0.329086128679
7 8:0.590616770251
7 9:0.596533397
8 9:0.0183052958175
</hsp>