sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A398-A400
X
>2J03-A398-A400
X
>2J01-A398-A400
X
>3OH5-A398-A400
X
>3OI1-A398-A400
X
>3OHZ-A398-A400
X
>3F1H-A405-A407
X
>3F1F-A405-A407
X
>3OH7-A398-A400
X
>3OHK-A398-A400
X
>3OHJ-A398-A400
X
</seq>
<hsp>
0 1:0.996261219397
0 2:1.0
0 3:0.771741681243
0 4:0.868392266208
0 5:0.864527779786
0 6:0.886453885126
0 7:0.874186508463
0 8:0.714926505981
0 9:0.682599039363
0 10:0.724224645863
1 2:0.0270734786626
1 3:0.511881978148
1 4:0.736006860068
1 5:0.697729049992
1 6:0.22798593069
1 7:0.214317381109
1 8:0.527665705094
1 9:0.463140612262
1 10:0.436205823859
2 3:0.516307396002
2 4:0.739051019359
2 5:0.701128771011
2 6:0.23996138244
2 7:0.227696150189
2 8:0.531650715541
2 9:0.465587709739
2 10:0.439033966509
3 4:0.394736453647
3 5:0.359124348113
3 6:0.399339285123
3 7:0.402735981751
3 8:0.0742204227538
3 9:0.161163531413
3 10:0.137299063697
4 5:0.0756407711314
4 6:0.683648582289
4 7:0.680631710218
4 8:0.39447600645
4 9:0.434034375837
4 10:0.422537549549
5 6:0.651809827395
5 7:0.647215640201
5 8:0.366668537177
5 9:0.408817101877
5 10:0.386473697558
6 7:0.0413036034605
6 8:0.403113589198
6 9:0.349984522823
6 10:0.346139927952
7 8:0.406383759611
7 9:0.348215865888
7 10:0.342388095515
8 9:0.118059225375
8 10:0.12713882462
9 10:0.0783935265856
</hsp>