sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L3C-E9-P49
X
>3L3C-F9-Q49
X
>3G9C-E7-P49
X
>3G9C-H7-S49
X
>3G8T-H9-S49
X
>3L3C-H9-S49
X
>3G8T-F9-Q49
X
</seq>
<hsp>
0 1:0.715052984592
0 2:0.42935058936
0 3:0.256486217986
0 4:0.812271869832
0 5:0.587726473924
0 6:0.88290132639
1 2:0.882579088727
1 3:0.786838791713
1 4:0.77117415737
1 5:0.466058050963
1 6:0.317696335341
2 3:0.265988496422
2 4:0.933118643134
2 5:0.660847049694
2 6:0.999998797434
3 4:0.783510893277
3 5:0.577996252859
3 6:0.923892095533
4 5:0.511248725368
4 6:0.846669866236
5 6:0.540142891686
</hsp>