sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N77-D74-D73
X
>1VQ5-02344-02343
X
>3CCL-02344-02343
X
>3CXC-02344-02343
X
>3CCS-02344-02343
X
>3CCV-02344-02343
X
>3CC7-02344-02343
X
>1K9M-A2344-A2343
X
>1YHQ-02344-02343
X
>1VQ8-02344-02343
X
</seq>
<hsp>
0 1:0.919923584124
0 2:0.923659140628
0 3:0.938983207723
0 4:0.999988465212
0 5:0.92126171918
0 6:0.900066157954
0 7:0.92886510863
0 8:0.972387138657
0 9:0.996110147859
1 2:0.177123637004
1 3:0.17740016766
1 4:0.325550353215
1 5:0.132124700235
1 6:0.135712648898
1 7:0.290477291515
1 8:0.323264453016
1 9:0.374169302106
2 3:0.183544728428
2 4:0.298429788918
2 5:0.106309817198
2 6:0.107864944936
2 7:0.280530558191
2 8:0.263660562822
2 9:0.334413555275
3 4:0.34724791272
3 5:0.14042887942
3 6:0.159450340564
3 7:0.231614752175
3 8:0.251831756929
3 9:0.311337586579
4 5:0.257390377737
4 6:0.237236582687
4 7:0.241245050671
4 8:0.210895772921
4 9:0.208678631962
5 6:0.0721978292281
5 7:0.198989921188
5 8:0.20538656479
5 9:0.268219937462
6 7:0.217988686569
6 8:0.223852246393
6 9:0.281590309438
7 8:0.120127433416
7 9:0.142553558689
8 9:0.0786323367526
</hsp>