sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNK-A905-A904
X
>3R8T-A717-A716
X
>3PDR-A88-A87
X
>2QUS-B50-B49
X
>3KNI-A2729-A2728
X
>1K8A-A1161-A1160
X
>1K9M-A1161-A1160
X
>1M90-A1161-A1160
X
>1JJ2-01161-01160
X
</seq>
<hsp>
0 1:0.786828569531
0 2:0.440324244864
0 3:0.692835531093
0 4:0.663287901415
0 5:0.564330568085
0 6:0.603681215939
0 7:0.595019604808
0 8:0.612157676082
1 2:0.818581965367
1 3:0.546639003482
1 4:1.0
1 5:0.587580596148
1 6:0.596896775672
1 7:0.728258908956
1 8:0.690394458274
2 3:0.59116078344
2 4:0.415527152832
2 5:0.592705923684
2 6:0.6260700531
2 7:0.646072841537
2 8:0.652323922253
3 4:0.800234844639
3 5:0.711485976007
3 6:0.72777207223
3 7:0.830515339007
3 8:0.802087738911
4 5:0.677107855001
4 6:0.695571472363
4 7:0.682315759052
4 8:0.68749552537
5 6:0.0457383895587
5 7:0.154833546256
5 8:0.122262092846
6 7:0.149328797348
6 8:0.104709322997
7 8:0.0580605397756
</hsp>