sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N78-C74-C73
X
>2UUA-A1294-A1293
X
>3OHD-A1087-A1086
X
>3CCQ-02644-02643
X
>2UUA-A1244-A1243
X
>2UUB-A1244-A1243
X
>3OGE-A1087-A1086
X
>3OGY-A599-A598
X
</seq>
<hsp>
0 1:0.999999592926
0 2:0.531062402694
0 3:0.633365945153
0 4:0.662614541918
0 5:0.665650568555
0 6:0.74026515723
0 7:0.674883531803
1 2:0.628812226583
1 3:0.587763723155
1 4:0.565769833434
1 5:0.623862926614
1 6:0.40744208365
1 7:0.454467722744
2 3:0.301059165974
2 4:0.502860528143
2 5:0.552846528866
2 6:0.375833111174
2 7:0.457138234638
3 4:0.629004349808
3 5:0.653509755455
3 6:0.333261636978
3 7:0.482499741842
4 5:0.139693757089
4 6:0.584710783843
4 7:0.434334503588
5 6:0.618083713052
5 7:0.456954682053
6 7:0.287219732712
</hsp>