sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2144-2143
X
>3R8N-A1347-A1346
X
>3U5F-6913-6912
X
>3R8O-A593-A592
X
>3LRR-C8-C7
X
>3CCU-0360-0359
X
>1YJW-0360-0359
X
>3U5H-796-795
X
>2QA4-0348-0347
X
>3KNH-A1316-A1315
X
>3OGE-A350-A349
X
>3OGY-A350-A349
X
</seq>
<hsp>
0 1:0.463184383606
0 2:0.521318931103
0 3:0.779880012308
0 4:0.831001498731
0 5:0.405414934188
0 6:0.411358497837
0 7:0.470576616706
0 8:0.52672155134
0 9:0.725511771724
0 10:0.517162237746
0 11:0.527082447779
1 2:0.308754364978
1 3:0.742307854242
1 4:0.54538142135
1 5:0.625271066942
1 6:0.531866096706
1 7:0.569784573026
1 8:0.568400191287
1 9:0.756095942498
1 10:0.683735076011
1 11:0.684066494432
2 3:0.517516861911
2 4:0.549687771329
2 5:0.61131354404
2 6:0.446003642299
2 7:0.680554989005
2 8:0.685994035652
2 9:0.671039817437
2 10:0.607315725839
2 11:0.598785823038
3 4:0.728075915978
3 5:0.850072584374
3 6:0.713903543106
3 7:1.0
3 8:0.894121076604
3 9:0.573791717866
3 10:0.664578980321
3 11:0.640544233937
4 5:0.878102557473
4 6:0.772091472052
4 7:0.77247660189
4 8:0.642073454244
4 9:0.647575306062
4 10:0.75436411645
4 11:0.751798834847
5 6:0.201749593361
5 7:0.351515861756
5 8:0.626024868863
5 9:0.814436984128
5 10:0.402408594523
5 11:0.408002132975
6 7:0.431804897008
6 8:0.650056472423
6 9:0.750276668452
6 10:0.398902984099
6 11:0.398553452408
7 8:0.444746401647
7 9:0.81716527936
7 10:0.511885149898
7 11:0.531953218526
8 9:0.522282200829
8 10:0.484992194967
8 11:0.50544824302
9 10:0.469149150746
9 11:0.470073864482
10 11:0.0429277615963
</hsp>