sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2F8S-D11-D10
X
>1VQ5-02278-02277
X
>1VQ7-02278-02277
X
>3G6E-02278-02277
X
>1S72-02278-02277
X
>3G71-02278-02277
X
>1M90-A2278-A2277
X
>1FFK-02231-02230
X
>3U5F-61281-61280
X
>3CCR-02528-02527
X
>3CCR-01245-01244
X
</seq>
<hsp>
0 1:0.381219018965
0 2:0.378103529352
0 3:0.312623694536
0 4:0.325135083798
0 5:0.283246578965
0 6:0.348931567511
0 7:0.396084620554
0 8:0.773173489293
0 9:0.783216764272
0 10:0.599896146569
1 2:0.0749595828479
1 3:0.119015574832
1 4:0.168639176313
1 5:0.123162179107
1 6:0.120236453279
1 7:0.252040475807
1 8:0.849966754272
1 9:1.0
1 10:0.734042941738
2 3:0.125493507329
2 4:0.178462958718
2 5:0.114639738653
2 6:0.12058891516
2 7:0.19618146653
2 8:0.839922470204
2 9:0.961348517741
2 10:0.706747937363
3 4:0.0957048572391
3 5:0.0658806715316
3 6:0.0743924770315
3 7:0.197641850889
3 8:0.75094283946
3 9:0.904422933037
3 10:0.639370407528
4 5:0.133577556063
4 6:0.0913758181706
4 7:0.230901781138
4 8:0.703216044997
4 9:0.888350413888
4 10:0.60435277067
5 6:0.0990797661712
5 7:0.191022106859
5 8:0.773208648198
5 9:0.886741824235
5 10:0.634575802515
6 7:0.187632135523
6 8:0.734903366586
6 9:0.902026320079
6 10:0.629811351619
7 8:0.716147636957
7 9:0.809021851138
7 10:0.562283078868
8 9:0.587194518465
8 10:0.375477934684
9 10:0.381733549093
</hsp>