sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-21326-21325
X
>3KNI-B103-B102
X
>3R8O-A1234-A1233
X
>1XMQ-A973-A972
X
>3R8S-A667-A666
X
>3G71-01140-01139
X
>3CCV-01140-01139
X
>3OH7-A576-A575
X
>3KNI-A576-A575
X
>3CCQ-01140-01139
X
</seq>
<hsp>
0 1:0.620908700526
0 2:0.450959626652
0 3:0.900049022611
0 4:0.535393264979
0 5:0.630392170449
0 6:0.623004528789
0 7:0.730711205806
0 8:0.727605316986
0 9:0.761331954805
1 2:0.722828178684
1 3:0.461056797028
1 4:0.835038686568
1 5:0.801150569737
1 6:0.780767325942
1 7:0.749881861544
1 8:0.628593407437
1 9:0.69450757704
2 3:0.999998262556
2 4:0.464920530132
2 5:0.661190083702
2 6:0.634705899665
2 7:0.831727729186
2 8:0.818527590767
2 9:0.701600622107
3 4:0.956761885118
3 5:0.755785344356
3 6:0.749009353733
3 7:0.659395303903
3 8:0.470884988172
3 9:0.587298261594
4 5:0.426612263438
4 6:0.391202416837
4 7:0.500966118735
4 8:0.592221515928
4 9:0.519878266408
5 6:0.0676348708262
5 7:0.413538635552
5 8:0.376214305976
5 9:0.310372685931
6 7:0.386531300617
6 8:0.359054872802
6 9:0.280333311702
7 8:0.228419584172
7 9:0.381751753776
8 9:0.274322762666
</hsp>