sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QWY-B32-B28
X
>3R8N-A1497-A1401
X
>3OHY-A1471-A1380
X
>3OI0-A1471-A1380
X
>3OHC-A1471-A1380
X
>3OHD-A1471-A1380
X
>3OGE-A1471-A1380
X
>3OGY-A1471-A1380
X
</seq>
<hsp>
0 1:0.999998931843
0 2:0.973098304127
0 3:0.965814075734
0 4:0.80213908964
0 5:0.795299961094
0 6:0.870056911387
0 7:0.869956072179
1 2:0.264740384733
1 3:0.264783837422
1 4:0.283539443418
1 5:0.282702876749
1 6:0.210471664783
1 7:0.212111610805
2 3:0.0376356895487
2 4:0.193032983034
2 5:0.194749152495
2 6:0.223933032411
2 7:0.233722889835
3 4:0.187320790685
3 5:0.185585685015
3 6:0.223946640416
3 7:0.230265376395
4 5:0.0349428660894
4 6:0.167194904158
4 7:0.177987070023
5 6:0.160933637511
5 7:0.166306567038
6 7:0.0378114651356
</hsp>