sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-6442-6457
X
>3U5B-2445-2460
X
>3R8O-A371-A389
X
>3KNH-A354-A372
X
>3U5B-2444-2461
X
>3U5F-6441-6458
X
>3F1E-A363-A381
X
>3F1G-A363-A381
X
>2UUB-A363-A381
X
>1FJG-A363-A381
X
</seq>
<hsp>
0 1:0.272534116031
0 2:0.890803788294
0 3:0.747941597341
0 4:0.743169762274
0 5:0.803435723905
0 6:0.954994830855
0 7:0.953767796688
0 8:0.893907253809
0 9:0.911825830575
1 2:1.0
1 3:0.849501936227
1 4:0.792913986594
1 5:0.94023290854
1 6:0.990129202379
1 7:0.989948330885
1 8:0.944587348435
1 9:0.964851451703
2 3:0.355348916225
2 4:0.442952285755
2 5:0.255705144691
2 6:0.469557071368
2 7:0.462713483447
2 8:0.308326091143
2 9:0.319562307451
3 4:0.404936491447
3 5:0.365210534359
3 6:0.404469650367
3 7:0.40283492228
3 8:0.265309488897
3 9:0.3444480611
4 5:0.482472385077
4 6:0.470386328894
4 7:0.465587767037
4 8:0.392027851615
4 9:0.438356754494
5 6:0.550005701056
5 7:0.54488402775
5 8:0.41092807677
5 9:0.386180381818
6 7:0.015415485704
6 8:0.240076949293
6 9:0.464801007381
7 8:0.237110156351
7 9:0.461941703864
8 9:0.238823328435
</hsp>