sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A1699-A1713
X
>3R8S-A1768-A1782
X
>3KNK-A1699-A1713
X
>3CME-01789-01803
X
>1NJI-A1789-A1803
X
>1Q81-A1789-A1803
X
>1K9M-A1789-A1803
X
>3CC2-01789-01803
X
>1S72-01789-01803
X
>1JJ2-01789-01803
X
</seq>
<hsp>
0 1:0.517938346748
0 2:0.434086778233
0 3:0.999991633088
0 4:0.865221564599
0 5:0.792381161057
0 6:0.847996156589
0 7:0.768285955127
0 8:0.779726752726
0 9:0.771543913446
1 2:0.478916088784
1 3:0.784512899704
1 4:0.607799532978
1 5:0.505952610496
1 6:0.664512091742
1 7:0.615302831506
1 8:0.583823910558
1 9:0.569219703789
2 3:0.903544454036
2 4:0.654423241759
2 5:0.491729407888
2 6:0.666757379468
2 7:0.601356414864
2 8:0.55279475738
2 9:0.556664164973
3 4:0.323270072789
3 5:0.683703891232
3 6:0.388335126098
3 7:0.381929633396
3 8:0.471224594397
3 9:0.441949560481
4 5:0.399378727141
4 6:0.261235289487
4 7:0.233157370556
4 8:0.232119565345
4 9:0.203647665254
5 6:0.407001480335
5 7:0.429286620684
5 8:0.344395891928
5 9:0.346966894948
6 7:0.225149319517
6 8:0.280094591854
6 9:0.261102986106
7 8:0.141177636181
7 9:0.124413922322
8 9:0.0403090471349
</hsp>