sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH7-A2322-A2288
X
>3R8N-A1200-A1056
X
>3OH5-A2322-A2288
X
>3OHZ-A2322-A2288
X
>3B5F-A6-B6
X
>3OHK-A2322-A2288
X
>3I2U-A6-B6
X
>3CQS-A6-B6
X
>3GS8-A6-B6
X
>3BBK-A6-B6
X
>3B58-A6-B6
X
>2P7F-A6-B6
X
</seq>
<hsp>
0 1:0.860976320441
0 2:0.0656456431718
0 3:0.314050160156
0 4:0.951824468725
0 5:0.312971501653
0 6:0.797400862137
0 7:0.770630069185
0 8:0.652276111712
0 9:0.753209094945
0 10:0.626117668559
0 11:0.629004937418
1 2:0.843437726554
1 3:1.0
1 4:0.524007155751
1 5:0.985454286856
1 6:0.435259514549
1 7:0.427097291927
1 8:0.405889223535
1 9:0.318528652345
1 10:0.410416362288
1 11:0.439953022958
2 3:0.305718847829
2 4:0.92433066357
2 5:0.299566741176
2 6:0.778748294153
2 7:0.736113262468
2 8:0.624763835476
2 9:0.725706243866
2 10:0.59552148255
2 11:0.593431332575
3 4:0.937217080594
3 5:0.216725220408
3 6:0.814454609659
3 7:0.80760708964
3 8:0.709767879385
3 9:0.808783985764
3 10:0.737152705872
3 11:0.717916813139
4 5:0.963132560185
4 6:0.361463239643
4 7:0.380731606024
4 8:0.454361680778
4 9:0.332273114438
4 10:0.563115878295
4 11:0.561284301428
5 6:0.870244061417
5 7:0.819858412966
5 8:0.742530769465
5 9:0.820827660314
5 10:0.745005446533
5 11:0.697873758464
6 7:0.34401335822
6 8:0.240179485574
6 9:0.248205410357
6 10:0.412600727544
6 11:0.457110209919
7 8:0.212305825771
7 9:0.155357572821
7 10:0.234525230132
7 11:0.225762063547
8 9:0.176679155345
8 10:0.188275080994
8 11:0.243587982018
9 10:0.259134478465
9 11:0.270007531727
10 11:0.151866407973
</hsp>