sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCM-0869-0832
X
>1VQ9-0869-0832
X
>1VQK-0869-0832
X
>1VQ8-0869-0832
X
>1VQN-0869-0832
X
>1VQL-0869-0832
X
>1VQO-0869-0832
X
>3CCJ-0869-0832
X
>1VQM-0869-0832
X
>3CMA-0869-0832
X
>2OTL-0869-0832
X
>1VQP-0869-0832
X
>3CPW-0869-0832
X
>1YHQ-0869-0832
X
>3CCE-0869-0832
X
>1FFK-0868-0831
X
</seq>
<hsp>
0 1:0.428256841007
0 2:0.386978706879
0 3:0.481100635895
0 4:0.57124457864
0 5:0.586581734814
0 6:0.533424627028
0 7:0.862285857165
0 8:0.552371989923
0 9:0.497543589509
0 10:0.803639414423
0 11:0.58242181887
0 12:0.486976853422
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0 14:0.688016843245
0 15:0.713482955646
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1 4:0.235198146499
1 5:0.257667634889
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1 10:0.873683620406
1 11:0.289365504641
1 12:0.510770530826
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1 14:0.641834620335
1 15:0.618641930208
2 3:0.146523729814
2 4:0.229151965313
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3 4:0.234824570097
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3 6:0.243466992519
3 7:1.0
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3 10:0.868724393456
3 11:0.245357034516
3 12:0.522239879299
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11 12:0.395857601468
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12 13:0.45698580409
12 14:0.316973531895
12 15:0.413895109501
13 14:0.249459246254
13 15:0.288013570032
14 15:0.199247255103
</hsp>