ClaRNA

Doublet Group distance statistics: 53016

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Distances from reference structure (by RMSD)

1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.000, 0.005, 0.011, 0.011 max_d=0.011 avg_d=0.005 std_dev=0.005
N1 A 0, 0.000, 0.009, 0.019, 0.019 max_d=0.019 avg_d=0.009 std_dev=0.009
C4 A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
N3 A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
C1' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
C5 A 0, 0.000, 0.011, 0.022, 0.022 max_d=0.022 avg_d=0.011 std_dev=0.011
C2 A 0, 0.000, 0.011, 0.022, 0.022 max_d=0.022 avg_d=0.011 std_dev=0.011
N7 A 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
N6 A 0, 0.000, 0.020, 0.040, 0.040 max_d=0.040 avg_d=0.020 std_dev=0.020
C8 A 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
N9 A 0, 0.000, 0.025, 0.051, 0.051 max_d=0.051 avg_d=0.025 std_dev=0.025
OP1 B 0, 0.000, 0.241, 0.482, 0.482 max_d=0.482 avg_d=0.241 std_dev=0.241
P B 0, 0.000, 0.320, 0.641, 0.641 max_d=0.641 avg_d=0.320 std_dev=0.320
O3' A 0, 0.000, 0.354, 0.708, 0.708 max_d=0.708 avg_d=0.354 std_dev=0.354
OP2 B 0, 0.000, 0.953, 1.905, 1.905 max_d=1.905 avg_d=0.953 std_dev=0.953
C3' A 0, 0.000, 0.983, 1.966, 1.966 max_d=1.966 avg_d=0.983 std_dev=0.983
C2' A 0, 0.000, 1.106, 2.213, 2.213 max_d=2.213 avg_d=1.106 std_dev=1.106
O4' A 0, 0.000, 1.115, 2.230, 2.230 max_d=2.230 avg_d=1.115 std_dev=1.115
O5' B 0, 0.000, 1.250, 2.500, 2.500 max_d=2.500 avg_d=1.250 std_dev=1.250
C4' A 0, 0.000, 1.387, 2.775, 2.775 max_d=2.775 avg_d=1.387 std_dev=1.387
O2' A 0, 0.000, 1.854, 3.708, 3.708 max_d=3.708 avg_d=1.854 std_dev=1.854
C5' B 0, 0.000, 1.956, 3.912, 3.912 max_d=3.912 avg_d=1.956 std_dev=1.956
C4' B 0, 0.000, 2.413, 4.826, 4.826 max_d=4.826 avg_d=2.413 std_dev=2.413
C5' A 0, 0.000, 2.536, 5.072, 5.072 max_d=5.072 avg_d=2.536 std_dev=2.536
C3' B 0, 0.000, 2.952, 5.904, 5.904 max_d=5.904 avg_d=2.952 std_dev=2.952
O3' B 0, 0.000, 3.292, 6.583, 6.583 max_d=6.583 avg_d=3.292 std_dev=3.292
O4' B 0, 0.000, 3.370, 6.740, 6.740 max_d=6.740 avg_d=3.370 std_dev=3.370
O5' A 0, 0.000, 3.544, 7.087, 7.087 max_d=7.087 avg_d=3.544 std_dev=3.544
C2' B 0, 0.000, 3.813, 7.625, 7.625 max_d=7.625 avg_d=3.813 std_dev=3.813
O2' B 0, 0.000, 3.901, 7.802, 7.802 max_d=7.802 avg_d=3.901 std_dev=3.901
C1' B 0, 0.000, 4.099, 8.197, 8.197 max_d=8.197 avg_d=4.099 std_dev=4.099
P A 0, 0.000, 4.845, 9.690, 9.690 max_d=9.690 avg_d=4.845 std_dev=4.845
C6 B 0, 0.000, 5.146, 10.293, 10.293 max_d=10.293 avg_d=5.146 std_dev=5.146
N1 B 0, 0.000, 5.193, 10.386, 10.386 max_d=10.386 avg_d=5.193 std_dev=5.193
OP2 A 0, 0.000, 5.202, 10.404, 10.404 max_d=10.404 avg_d=5.202 std_dev=5.202
OP1 A 0, 0.000, 5.744, 11.488, 11.488 max_d=11.488 avg_d=5.744 std_dev=5.744
C5 B 0, 0.000, 6.117, 12.233, 12.233 max_d=12.233 avg_d=6.117 std_dev=6.117
C2 B 0, 0.000, 6.335, 12.669, 12.669 max_d=12.669 avg_d=6.335 std_dev=6.335
O2 B 0, 0.000, 6.528, 13.057, 13.057 max_d=13.057 avg_d=6.528 std_dev=6.528
C4 B 0, 0.000, 7.271, 14.543, 14.543 max_d=14.543 avg_d=7.271 std_dev=7.271
N3 B 0, 0.000, 7.301, 14.603, 14.603 max_d=14.603 avg_d=7.301 std_dev=7.301
O4 B 0, 0.000, 8.233, 16.466, 16.466 max_d=16.466 avg_d=8.233 std_dev=8.233

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.20 0.20 0.44 0.15
C2 0.01 0.00 0.15 0.08 0.00 0.48 0.00 0.73 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.55 0.08 0.51 1.38 1.38 1.49 1.41
C2' 0.00 0.15 0.00 0.00 0.08 0.00 0.04 0.01 0.07 0.08 0.11 0.14 0.05 0.04 0.01 0.00 0.01 0.00 0.01 0.64 0.25 0.11
C3' 0.00 0.08 0.00 0.00 0.03 0.00 0.00 0.00 0.02 0.06 0.06 0.08 0.00 0.05 0.01 0.00 0.00 0.00 0.18 0.69 0.33 0.16
C4 0.00 0.00 0.08 0.03 0.00 0.21 0.00 0.31 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.26 0.04 0.25 0.77 0.48 0.76 0.67
C4' 0.00 0.48 0.00 0.00 0.21 0.00 0.07 0.00 0.18 0.27 0.36 0.45 0.10 0.17 0.01 0.00 0.00 0.00 0.00 0.24 0.47 0.11
C5 0.00 0.00 0.04 0.00 0.00 0.07 0.00 0.12 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.10 0.02 0.08 0.59 0.26 0.42 0.44
C5' 0.00 0.73 0.01 0.00 0.31 0.00 0.12 0.00 0.30 0.39 0.57 0.67 0.18 0.25 0.01 0.01 0.00 0.00 0.01 0.31 0.09 0.01
C6 0.00 0.00 0.07 0.02 0.00 0.18 0.00 0.30 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.23 0.04 0.19 0.86 0.66 0.68 0.75
C8 0.02 0.01 0.08 0.06 0.01 0.27 0.00 0.39 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.33 0.04 0.30 0.10 0.60 0.28 0.31
N1 0.01 0.00 0.11 0.06 0.00 0.36 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.06 0.38 1.22 1.18 1.19 1.20
N3 0.01 0.00 0.14 0.08 0.00 0.45 0.01 0.67 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.53 0.07 0.53 1.23 1.09 1.37 1.22
N6 0.01 0.00 0.05 0.00 0.00 0.10 0.00 0.18 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.14 0.03 0.11 0.73 0.51 0.45 0.59
N7 0.01 0.01 0.04 0.05 0.00 0.17 0.00 0.25 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.20 0.02 0.18 0.11 0.35 0.18 0.12
N9 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.31 0.11 0.32 0.18
O2' 0.00 0.55 0.00 0.00 0.26 0.00 0.10 0.01 0.23 0.33 0.43 0.53 0.14 0.20 0.01 0.00 0.03 0.00 0.05 0.77 0.26 0.17
O3' 0.01 0.08 0.01 0.00 0.04 0.00 0.02 0.00 0.04 0.04 0.06 0.07 0.03 0.02 0.00 0.03 0.00 0.01 0.21 0.57 0.56 0.09
O4' 0.00 0.51 0.00 0.00 0.25 0.00 0.08 0.00 0.19 0.30 0.38 0.53 0.11 0.18 0.01 0.00 0.01 0.00 0.28 0.06 0.52 0.29
O5' 0.20 1.38 0.01 0.18 0.77 0.00 0.59 0.01 0.86 0.10 1.22 1.23 0.73 0.11 0.31 0.05 0.21 0.28 0.00 0.00 0.01 0.00
OP1 0.20 1.38 0.64 0.69 0.48 0.24 0.26 0.31 0.66 0.60 1.18 1.09 0.51 0.35 0.11 0.77 0.57 0.06 0.00 0.00 0.01 0.00
OP2 0.44 1.49 0.25 0.33 0.76 0.47 0.42 0.09 0.68 0.28 1.19 1.37 0.45 0.18 0.32 0.26 0.56 0.52 0.01 0.01 0.00 0.00
P 0.15 1.41 0.11 0.16 0.67 0.11 0.44 0.01 0.75 0.31 1.20 1.22 0.59 0.12 0.18 0.17 0.09 0.29 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.16 0.04 0.20 0.29 0.14 0.16 0.28 0.14 0.29 0.16 0.04 0.05 0.06 0.82 0.13 0.10 0.05 0.02 0.61 0.11
C2 0.68 0.80 0.82 0.28 0.98 0.20 1.02 0.16 0.94 0.82 0.88 0.72 0.61 0.20 1.02 0.48 0.21 0.01 0.49 0.03
C2' 0.08 0.28 0.03 0.48 0.26 0.31 0.10 0.30 0.04 0.13 0.33 0.34 0.14 0.95 0.31 0.08 0.19 0.04 0.87 0.28
C3' 0.02 0.31 0.06 0.34 0.36 0.12 0.14 0.07 0.01 0.10 0.42 0.37 0.04 0.82 0.48 0.07 0.03 0.27 0.50 0.03
C4 0.60 0.69 0.66 0.11 0.91 0.13 0.97 0.10 0.87 0.73 0.78 0.60 0.47 0.41 0.96 0.45 0.14 0.02 0.56 0.06
C4' 0.67 0.35 0.68 0.29 0.31 0.51 0.53 0.58 0.65 0.56 0.25 0.29 0.54 0.24 0.19 0.72 0.61 0.80 0.18 0.62
C5 0.94 1.18 0.96 0.36 1.51 0.35 1.52 0.28 1.33 1.16 1.34 1.07 0.75 0.16 1.62 0.73 0.29 0.05 0.50 0.02
C5' 1.31 0.97 1.29 0.93 0.87 1.19 1.09 1.24 1.25 1.18 0.84 0.92 1.11 0.42 0.73 1.38 1.18 1.31 0.66 1.10
C6 1.19 1.54 1.22 0.59 1.92 0.52 1.90 0.43 1.66 1.48 1.74 1.42 0.99 0.10 2.06 0.93 0.42 0.06 0.41 0.03
C8 0.69 0.83 0.69 0.11 1.11 0.18 1.16 0.14 1.02 0.86 0.96 0.72 0.51 0.43 1.20 0.55 0.17 0.04 0.57 0.06
N1 1.08 1.37 1.17 0.58 1.68 0.47 1.68 0.39 1.50 1.33 1.53 1.26 0.94 0.11 1.77 0.82 0.40 0.05 0.39 0.04
N3 0.42 0.44 0.54 0.02 0.58 0.02 0.65 0.00 0.61 0.50 0.49 0.37 0.36 0.47 0.60 0.28 0.06 0.00 0.57 0.08
N6 1.50 2.01 1.49 0.82 2.52 0.72 2.44 0.59 2.10 1.89 2.30 1.88 1.25 0.35 2.73 1.19 0.55 0.07 0.33 0.08
N7 0.96 1.22 0.95 0.33 1.58 0.35 1.58 0.29 1.38 1.20 1.41 1.10 0.74 0.20 1.72 0.77 0.29 0.05 0.51 0.02
N9 0.46 0.49 0.50 0.05 0.68 0.03 0.77 0.02 0.70 0.56 0.56 0.39 0.33 0.57 0.72 0.35 0.08 0.01 0.60 0.09
O2' 0.78 0.97 0.69 1.16 0.95 1.01 0.80 1.01 0.75 0.84 1.01 1.03 0.76 1.58 0.98 0.80 0.82 0.60 1.55 0.90
O3' 0.54 0.92 0.47 0.87 0.97 0.65 0.73 0.57 0.58 0.68 1.04 0.99 0.54 1.36 1.09 0.48 0.39 0.05 0.80 0.30
O4' 0.75 0.56 0.77 0.32 0.61 0.49 0.79 0.54 0.84 0.72 0.52 0.48 0.61 0.24 0.55 0.74 0.59 0.69 0.14 0.57
O5' 2.03 1.60 2.00 1.68 1.42 1.97 1.68 2.04 1.89 1.85 1.42 1.55 1.84 1.17 1.22 2.14 1.98 2.14 1.49 1.93
OP1 2.80 2.21 2.86 2.66 1.76 2.89 2.01 2.91 2.37 2.46 1.90 2.26 2.74 2.27 1.46 2.92 2.73 2.84 2.23 2.60
OP2 2.49 2.00 2.55 2.29 1.71 2.48 1.96 2.54 2.22 2.24 1.77 2.00 2.41 1.80 1.48 2.56 2.42 2.55 2.17 2.42
P 2.41 1.88 2.43 2.18 1.56 2.44 1.82 2.50 2.12 2.14 1.63 1.89 2.29 1.72 1.31 2.53 2.37 2.52 1.95 2.31

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.01 0.02 0.00 0.28 0.01 0.00 0.39 0.40 0.24 0.35
C2 0.01 0.00 0.14 0.29 0.00 0.12 0.02 0.18 0.02 0.00 0.00 0.00 0.24 0.03 0.00 0.02 0.39 0.37 0.01 0.32
C2' 0.00 0.14 0.00 0.00 0.01 0.00 0.07 0.14 0.10 0.01 0.10 0.25 0.00 0.04 0.01 0.01 0.57 0.54 0.73 0.67
C3' 0.00 0.29 0.00 0.00 0.36 0.00 0.31 0.00 0.24 0.21 0.35 0.24 0.00 0.01 0.39 0.00 0.23 0.21 0.48 0.33
C4 0.01 0.00 0.01 0.36 0.00 0.20 0.00 0.30 0.00 0.01 0.00 0.01 0.33 0.15 0.00 0.01 0.41 0.43 0.30 0.28
C4' 0.00 0.12 0.00 0.00 0.20 0.00 0.20 0.00 0.16 0.11 0.17 0.07 0.22 0.03 0.21 0.00 0.00 0.11 0.08 0.04
C5 0.00 0.02 0.07 0.31 0.00 0.20 0.00 0.28 0.00 0.00 0.01 0.02 0.28 0.15 0.00 0.05 0.43 0.49 0.35 0.27
C5' 0.02 0.18 0.14 0.00 0.30 0.00 0.28 0.00 0.21 0.13 0.25 0.12 0.07 0.14 0.33 0.00 0.01 0.21 0.13 0.01
C6 0.00 0.02 0.10 0.24 0.00 0.16 0.00 0.21 0.00 0.01 0.01 0.01 0.22 0.06 0.01 0.05 0.46 0.50 0.19 0.31
N1 0.00 0.00 0.01 0.21 0.01 0.11 0.00 0.13 0.01 0.00 0.00 0.00 0.19 0.06 0.01 0.01 0.43 0.43 0.02 0.34
N3 0.01 0.00 0.10 0.35 0.00 0.17 0.01 0.25 0.01 0.00 0.00 0.01 0.30 0.08 0.00 0.01 0.40 0.39 0.14 0.30
O2 0.02 0.00 0.25 0.24 0.01 0.07 0.02 0.12 0.01 0.00 0.01 0.00 0.17 0.12 0.01 0.06 0.36 0.33 0.14 0.33
O2' 0.00 0.24 0.00 0.00 0.33 0.22 0.28 0.07 0.22 0.19 0.30 0.17 0.00 0.06 0.36 0.18 0.25 0.24 0.68 0.44
O3' 0.28 0.03 0.04 0.01 0.15 0.03 0.15 0.14 0.06 0.06 0.08 0.12 0.06 0.00 0.20 0.19 0.15 0.27 0.23 0.05
O4 0.01 0.00 0.01 0.39 0.00 0.21 0.00 0.33 0.01 0.01 0.00 0.01 0.36 0.20 0.00 0.01 0.40 0.43 0.38 0.26
O4' 0.00 0.02 0.01 0.00 0.01 0.00 0.05 0.00 0.05 0.01 0.01 0.06 0.18 0.19 0.01 0.00 0.19 0.26 0.04 0.10
O5' 0.39 0.39 0.57 0.23 0.41 0.00 0.43 0.01 0.46 0.43 0.40 0.36 0.25 0.15 0.40 0.19 0.00 0.01 0.00 0.00
OP1 0.40 0.37 0.54 0.21 0.43 0.11 0.49 0.21 0.50 0.43 0.39 0.33 0.24 0.27 0.43 0.26 0.01 0.00 0.00 0.00
OP2 0.24 0.01 0.73 0.48 0.30 0.08 0.35 0.13 0.19 0.02 0.14 0.14 0.68 0.23 0.38 0.04 0.00 0.00 0.00 0.00
P 0.35 0.32 0.67 0.33 0.28 0.04 0.27 0.01 0.31 0.34 0.30 0.33 0.44 0.05 0.26 0.10 0.00 0.00 0.00 0.00