ClaRNA

Doublet Group distance statistics: 53020

back

Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
N1 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
N9 A 0, 0.000, 0.002, 0.004, 0.004 max_d=0.004 avg_d=0.002 std_dev=0.002
C2 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C4 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
N3 A 0, 0.000, 0.005, 0.009, 0.009 max_d=0.009 avg_d=0.005 std_dev=0.005
C5 A 0, 0.000, 0.005, 0.011, 0.011 max_d=0.011 avg_d=0.005 std_dev=0.005
C1' A 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
C8 A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
P A 0, 0.000, 0.007, 0.015, 0.015 max_d=0.015 avg_d=0.007 std_dev=0.007
C2' A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
OP2 A 0, 0.000, 0.008, 0.016, 0.016 max_d=0.016 avg_d=0.008 std_dev=0.008
N6 A 0, 0.000, 0.010, 0.019, 0.019 max_d=0.019 avg_d=0.010 std_dev=0.010
C3' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
O2' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
N7 A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
C5' A 0, 0.000, 0.011, 0.022, 0.022 max_d=0.022 avg_d=0.011 std_dev=0.011
C4' A 0, 0.000, 0.011, 0.023, 0.023 max_d=0.023 avg_d=0.011 std_dev=0.011
O4' A 0, 0.000, 0.013, 0.025, 0.025 max_d=0.025 avg_d=0.013 std_dev=0.013
O3' B 0, 0.000, 0.014, 0.029, 0.029 max_d=0.029 avg_d=0.014 std_dev=0.014
C2' B 0, 0.000, 0.017, 0.033, 0.033 max_d=0.033 avg_d=0.017 std_dev=0.017
C3' B 0, 0.000, 0.017, 0.035, 0.035 max_d=0.035 avg_d=0.017 std_dev=0.017
C4' B 0, 0.000, 0.017, 0.035, 0.035 max_d=0.035 avg_d=0.017 std_dev=0.017
O5' A 0, 0.000, 0.017, 0.035, 0.035 max_d=0.035 avg_d=0.017 std_dev=0.017
O4' B 0, 0.000, 0.018, 0.035, 0.035 max_d=0.035 avg_d=0.018 std_dev=0.018
O3' A 0, 0.000, 0.022, 0.043, 0.043 max_d=0.043 avg_d=0.022 std_dev=0.022
C1' B 0, 0.000, 0.022, 0.044, 0.044 max_d=0.044 avg_d=0.022 std_dev=0.022
OP1 B 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
C5' B 0, 0.000, 0.024, 0.048, 0.048 max_d=0.048 avg_d=0.024 std_dev=0.024
OP2 B 0, 0.000, 0.024, 0.048, 0.048 max_d=0.048 avg_d=0.024 std_dev=0.024
O2' B 0, 0.000, 0.024, 0.049, 0.049 max_d=0.049 avg_d=0.024 std_dev=0.024
OP1 A 0, 0.000, 0.025, 0.051, 0.051 max_d=0.051 avg_d=0.025 std_dev=0.025
N1 B 0, 0.000, 0.026, 0.053, 0.053 max_d=0.053 avg_d=0.026 std_dev=0.026
C4 B 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
C6 B 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
C5 B 0, 0.000, 0.028, 0.055, 0.055 max_d=0.055 avg_d=0.028 std_dev=0.028
O4 B 0, 0.000, 0.028, 0.056, 0.056 max_d=0.056 avg_d=0.028 std_dev=0.028
N3 B 0, 0.000, 0.028, 0.057, 0.057 max_d=0.057 avg_d=0.028 std_dev=0.028
P B 0, 0.000, 0.030, 0.060, 0.060 max_d=0.060 avg_d=0.030 std_dev=0.030
C2 B 0, 0.000, 0.030, 0.060, 0.060 max_d=0.060 avg_d=0.030 std_dev=0.030
O5' B 0, 0.000, 0.031, 0.061, 0.061 max_d=0.061 avg_d=0.031 std_dev=0.031
O2 B 0, 0.000, 0.045, 0.090, 0.090 max_d=0.090 avg_d=0.045 std_dev=0.045

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00
C2 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C4 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01
C5 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00
C5' 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00
C8 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00
N3 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00
N6 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.01
N7 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00
N9 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00
O2' 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00
O4' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.00 0.01
O5' 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.00 0.00 0.00
OP1 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.00 0.00 0.00 0.00
OP2 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
P 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.02 0.00 0.01 0.01
C2 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.01 0.01 0.00 0.00
C2' 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.00 0.01 0.01
C3' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.01 0.00 0.01 0.01
C4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00
C4' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.00 0.02 0.00 0.01 0.01
C5 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00
C5' 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00
C6 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00
C8 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.01 0.00 0.01 0.00
N1 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.01 0.00 0.00 0.00
N3 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.01 0.00 0.00
N6 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00
N7 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.00 0.00
N9 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00
O2' 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.02 0.00 0.01 0.01
O3' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.01 0.01
O4' 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.02 0.01 0.01 0.01 0.00 0.02 0.01 0.01 0.01 0.02 0.00 0.01 0.01
O5' 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00
OP1 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01
OP2 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.02 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.01 0.02 0.01 0.01 0.01
P 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01
C2 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.01
C3' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.02 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01
C4 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01
C4' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01
C5 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C5' 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
N3 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01
O2 0.01 0.00 0.02 0.02 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.00 0.00 0.01 0.00
O2' 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00
O3' 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01
O4 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01
O5' 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
OP1 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00
OP2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
P 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00