sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11876-11932
X
>3U5H-51882-51936
X
>3R8S-A788-A751
X
>3R8T-A788-A751
X
>2QUS-B34-B12
X
>2QUS-A34-A12
X
</seq>
<hsp>
0 1:0.0227893637386
0 2:0.739586642427
0 3:0.760289097414
0 4:0.987961090056
0 5:0.999999680422
1 2:0.727852018107
1 3:0.747656223567
1 4:0.985814627567
1 5:0.997753697912
2 3:0.0929633968081
2 4:0.726053512602
2 5:0.743026106192
3 4:0.772332829827
3 5:0.789273978955
4 5:0.0271025551532
</hsp>