sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YJ9-0175-0143
X
>2QA4-0175-0143
X
>3CCS-0175-0143
X
>3CCQ-0175-0143
X
>3CCM-0175-0143
X
>1VQP-0175-0143
X
>1VQM-0175-0143
X
>1VQ7-0175-0143
X
>3CPW-0175-0143
X
>3CC2-0175-0143
X
>1S72-0175-0143
X
>1JJ2-0175-0143
X
</seq>
<hsp>
0 1:0.743459386992
0 2:0.214363986824
0 3:0.212750011857
0 4:0.333112401239
0 5:0.420358353542
0 6:0.464223507688
0 7:0.507837346625
0 8:0.362825620682
0 9:0.444618593474
0 10:0.446951144225
0 11:0.453655694929
1 2:0.886098285329
1 3:0.825443961132
1 4:0.919430360246
1 5:0.921103665437
1 6:1.0
1 7:0.850255921831
1 8:0.92081176272
1 9:0.725303757054
1 10:0.785112427146
1 11:0.796238813516
2 3:0.176724844388
2 4:0.186445338855
2 5:0.289607424685
2 6:0.305475882587
2 7:0.404352840971
2 8:0.19958054505
2 9:0.384493695501
2 10:0.357720045485
2 11:0.355202092544
3 4:0.189440141444
3 5:0.262874134734
3 6:0.313929570944
3 7:0.401026909724
3 8:0.233324080638
3 9:0.36453104045
3 10:0.368348712876
3 11:0.373123669679
4 5:0.205001908477
4 6:0.240974024009
4 7:0.360470102749
4 8:0.157649358094
4 9:0.32697905908
4 10:0.321408386005
4 11:0.325813199912
5 6:0.0971107075313
5 7:0.210715571289
5 8:0.173679361739
5 9:0.26415765948
5 10:0.230544730532
5 11:0.240138362751
6 7:0.243113315908
6 8:0.176657508349
6 9:0.335610182457
6 10:0.282059462224
6 11:0.28469698217
7 8:0.280664038573
7 9:0.179840654873
7 10:0.115136338998
7 11:0.116174530525
8 9:0.302146384782
8 10:0.268999177178
8 11:0.265029138629
9 10:0.0959088627828
9 11:0.117762657768
10 11:0.0410569222385
</hsp>