sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OH5-A2492-A2491
X
>3OH7-A2492-A2491
X
>1N32-A305-A344
X
>1FJG-A305-A344
X
>3OHC-A305-A344
X
>2VQF-A305-A344
X
>3KNH-A296-A335
X
>2VQE-A305-A344
X
</seq>
<hsp>
0 1:0.00383364061601
0 2:0.974017290359
0 3:0.996628898073
0 4:0.999999756791
0 5:0.988275907944
0 6:0.993718546514
0 7:0.975651222048
1 2:0.973445899424
1 3:0.995948630682
1 4:0.999354729154
1 5:0.987567923438
1 6:0.992962681312
1 7:0.974973520876
2 3:0.0432450813912
2 4:0.0460619854329
2 5:0.047528389105
2 6:0.0770013545417
2 7:0.036304798123
3 4:0.0326247431128
3 5:0.0156544217857
3 6:0.0525875576034
3 7:0.0286576401865
4 5:0.040597868892
4 6:0.0673810040329
4 7:0.0418115404672
5 6:0.0456538964885
5 7:0.0203817987184
6 7:0.0539192561837
</hsp>