sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A269-A369
X
>1Y39-D52-D36
X
>1MMS-C52-C36
X
>1MMS-D52-D36
X
>1FFK-0228-0366
X
>3CCR-0229-0367
X
>3CCE-0229-0367
X
</seq>
<hsp>
0 1:0.618777681365
0 2:0.654774139978
0 3:0.664689371279
0 4:0.760066484988
0 5:0.550627988199
0 6:0.648046460166
1 2:0.63705221036
1 3:0.644668966532
1 4:0.999998316956
1 5:0.810641870163
1 6:0.81179866679
2 3:0.0469693464311
2 4:0.542088472858
2 5:0.341305366214
2 6:0.383172859064
3 4:0.525028676112
3 5:0.346183646217
3 6:0.375332801925
4 5:0.321786090882
4 6:0.25996073653
5 6:0.215352708929
</hsp>