sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1237-1239
X
>3R8T-A809-A586
X
>3OH7-A818-A596
X
>3R8S-A809-A586
X
>3F1H-A830-A605
X
>3OH5-A818-A596
X
>3F1F-A830-A605
X
>3OI1-A818-A596
X
>2J03-A818-A596
X
>2J01-A818-A596
X
</seq>
<hsp>
0 1:0.717775627848
0 2:0.581757296357
0 3:0.678150283399
0 4:0.999998576662
0 5:0.528925030431
0 6:0.970499018418
0 7:0.499199076718
0 8:0.833863613743
0 9:0.807916633832
1 2:0.500111019638
1 3:0.289792601036
1 4:0.38435868128
1 5:0.484304384735
1 6:0.358928085732
1 7:0.485125317692
1 8:0.183708804132
1 9:0.188911822623
2 3:0.266139266482
2 4:0.700956603654
2 5:0.0990021693223
2 6:0.663384169721
2 7:0.250923964551
2 8:0.568416526459
2 9:0.548584380374
3 4:0.483216843246
3 5:0.270382965583
3 6:0.446144882578
3 7:0.354344126514
3 8:0.355999070881
3 9:0.344247648006
4 5:0.699128509911
4 6:0.0487116679805
4 7:0.753972049573
4 8:0.313665824974
4 9:0.326114340419
5 6:0.662871504004
5 7:0.230668538205
5 8:0.554293482317
5 9:0.533353623513
6 7:0.715380785386
6 8:0.290410580741
6 9:0.301576901017
7 8:0.547304507543
7 9:0.524641199707
8 9:0.0458598276122
</hsp>