sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1G-A394-A476
X
>3F1E-A394-A476
X
>3OHC-A394-A476
X
>3OHD-A394-A476
X
>1XMQ-A394-A476
X
>2UUB-A394-A476
X
>2VQE-A394-A476
X
>2VQF-A394-A476
X
>1GID-B156-B4
X
</seq>
<hsp>
0 1:0.0337329848313
0 2:0.790089753423
0 3:0.766679586122
0 4:0.635065045193
0 5:0.740028292999
0 6:0.727892487198
0 7:0.665088398237
0 8:1.0
1 2:0.767885806858
1 3:0.744273736206
1 4:0.609430165477
1 5:0.71044360662
1 6:0.699705244949
1 7:0.638149669452
1 8:0.977312991143
2 3:0.0466677756168
2 4:0.396392364248
2 5:0.456504896108
2 6:0.455240352098
2 7:0.418036532634
2 8:0.71735391556
3 4:0.375096624381
3 5:0.448487712718
3 6:0.439591030304
3 7:0.410613836645
3 8:0.723982955273
4 5:0.333683141273
4 6:0.270914727983
4 7:0.370378006825
4 8:0.684295068165
5 6:0.274421395009
5 7:0.186801389526
5 8:0.491461134978
6 7:0.382200350935
6 8:0.555792306284
7 8:0.518280492007
</hsp>