sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-52505-52470
X
>3U5D-12504-12469
X
>2AWE-F5-H5
X
>2AWE-D5-A5
X
>2AWE-E5-G5
X
>2AWE-B5-D5
X
>2AWE-C5-B5
X
>2AWE-A5-C5
X
</seq>
<hsp>
0 1:0.247959988251
0 2:0.794563888657
0 3:0.933112193213
0 4:0.912142149365
0 5:0.999995537715
0 6:0.865005329441
0 7:0.869910744963
1 2:0.665186347553
1 3:0.745287356553
1 4:0.791752492407
1 5:0.839028136719
1 6:0.708581538456
1 7:0.697958301916
2 3:0.333878944919
2 4:0.250604487418
2 5:0.327713859267
2 6:0.188275298075
2 7:0.261872708453
3 4:0.41674393023
3 5:0.231653578697
3 6:0.242589303
3 7:0.15507688632
4 5:0.398222372466
4 6:0.223456291343
4 7:0.391214638137
5 6:0.245603501252
5 7:0.196412899326
6 7:0.186508668752
</hsp>