ClaRNA

Doublet Group distance statistics: 53140

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C5 A 0, 0.000, 0.001, 0.002, 0.002 max_d=0.002 avg_d=0.001 std_dev=0.001
N3 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
C6 A 0, 0.000, 0.002, 0.005, 0.005 max_d=0.005 avg_d=0.002 std_dev=0.002
C4 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
N1 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C3' A 0, 0.000, 0.003, 0.007, 0.007 max_d=0.007 avg_d=0.003 std_dev=0.003
C1' A 0, 0.000, 0.004, 0.009, 0.009 max_d=0.009 avg_d=0.004 std_dev=0.004
C2 A 0, 0.000, 0.005, 0.010, 0.010 max_d=0.010 avg_d=0.005 std_dev=0.005
C3' B 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
C4' B 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
C2' A 0, 0.000, 0.008, 0.016, 0.016 max_d=0.016 avg_d=0.008 std_dev=0.008
O2 A 0, 0.000, 0.009, 0.017, 0.017 max_d=0.017 avg_d=0.009 std_dev=0.009
N6 B 0, 0.000, 0.009, 0.018, 0.018 max_d=0.018 avg_d=0.009 std_dev=0.009
N4 A 0, 0.000, 0.009, 0.019, 0.019 max_d=0.019 avg_d=0.009 std_dev=0.009
OP2 B 0, 0.000, 0.012, 0.025, 0.025 max_d=0.025 avg_d=0.012 std_dev=0.012
OP1 B 0, 0.000, 0.012, 0.025, 0.025 max_d=0.025 avg_d=0.012 std_dev=0.012
C6 B 0, 0.000, 0.013, 0.026, 0.026 max_d=0.026 avg_d=0.013 std_dev=0.013
O3' A 0, 0.000, 0.013, 0.027, 0.027 max_d=0.027 avg_d=0.013 std_dev=0.013
C4' A 0, 0.000, 0.014, 0.027, 0.027 max_d=0.027 avg_d=0.014 std_dev=0.014
N1 B 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
N7 B 0, 0.000, 0.014, 0.029, 0.029 max_d=0.029 avg_d=0.014 std_dev=0.014
O5' A 0, 0.000, 0.015, 0.030, 0.030 max_d=0.030 avg_d=0.015 std_dev=0.015
C2 B 0, 0.000, 0.015, 0.031, 0.031 max_d=0.031 avg_d=0.015 std_dev=0.015
C8 B 0, 0.000, 0.015, 0.031, 0.031 max_d=0.031 avg_d=0.015 std_dev=0.015
C2' B 0, 0.000, 0.016, 0.031, 0.031 max_d=0.031 avg_d=0.016 std_dev=0.016
C1' B 0, 0.000, 0.016, 0.031, 0.031 max_d=0.031 avg_d=0.016 std_dev=0.016
C5 B 0, 0.000, 0.016, 0.033, 0.033 max_d=0.033 avg_d=0.016 std_dev=0.016
O5' B 0, 0.000, 0.018, 0.035, 0.035 max_d=0.035 avg_d=0.018 std_dev=0.018
P A 0, 0.000, 0.018, 0.037, 0.037 max_d=0.037 avg_d=0.018 std_dev=0.018
C4 B 0, 0.000, 0.020, 0.039, 0.039 max_d=0.039 avg_d=0.020 std_dev=0.020
N9 B 0, 0.000, 0.020, 0.040, 0.040 max_d=0.040 avg_d=0.020 std_dev=0.020
N3 B 0, 0.000, 0.020, 0.041, 0.041 max_d=0.041 avg_d=0.020 std_dev=0.020
OP1 A 0, 0.000, 0.020, 0.041, 0.041 max_d=0.041 avg_d=0.020 std_dev=0.020
O2' B 0, 0.000, 0.022, 0.043, 0.043 max_d=0.043 avg_d=0.022 std_dev=0.022
O4' B 0, 0.000, 0.023, 0.045, 0.045 max_d=0.045 avg_d=0.023 std_dev=0.023
P B 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
O3' B 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
OP2 A 0, 0.000, 0.024, 0.047, 0.047 max_d=0.047 avg_d=0.024 std_dev=0.024
C5' B 0, 0.000, 0.024, 0.048, 0.048 max_d=0.048 avg_d=0.024 std_dev=0.024
O4' A 0, 0.000, 0.028, 0.056, 0.056 max_d=0.056 avg_d=0.028 std_dev=0.028
O2' A 0, 0.000, 0.029, 0.059, 0.059 max_d=0.059 avg_d=0.029 std_dev=0.029
C5' A 0, 0.000, 0.030, 0.060, 0.060 max_d=0.060 avg_d=0.030 std_dev=0.030

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01
C2 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.00 0.01 0.00 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C4 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01
C4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.01
C5' 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C6 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.01
N1 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.00 0.01 0.00 0.00
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01
N4 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01
O2 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00
O2' 0.01 0.01 0.00 0.01 0.01 0.00 0.02 0.00 0.02 0.02 0.01 0.01 0.01 0.00 0.02 0.01 0.00 0.02 0.00 0.01
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.00
O4' 0.00 0.02 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.02 0.01 0.00 0.00 0.01 0.00 0.02 0.01
O5' 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00
OP1 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.02 0.01 0.00 0.01 0.00 0.00 0.00
OP2 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00
P 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01
C2 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
C2' 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01
C3' 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
C4 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.01
C4' 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01
C5 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01
C5' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.01 0.01 0.02
C6 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
N1 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
N3 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01
N4 0.01 0.02 0.01 0.01 0.02 0.00 0.02 0.01 0.01 0.01 0.02 0.02 0.01 0.01 0.02 0.01 0.01 0.01 0.00 0.00 0.01 0.01
O2 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.01 0.01 0.02
O2' 0.02 0.03 0.02 0.02 0.03 0.02 0.02 0.03 0.03 0.02 0.03 0.03 0.03 0.02 0.03 0.02 0.02 0.01 0.01 0.01 0.01 0.01
O3' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
O4' 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.00
O5' 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.01
OP1 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.01 0.01 0.02
OP2 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.02
P 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.01 0.02

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01
C2 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01
C2' 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01 0.02
C3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.02
C4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01
C4' 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01
C5' 0.00 0.02 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.02 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01
C8 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01
N3 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.02
N6 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00
N7 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01
N9 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01
O2' 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.01 0.02
O3' 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.02
O4' 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.02 0.00
O5' 0.01 0.01 0.02 0.02 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.02 0.01 0.01 0.00 0.01 0.01 0.00
OP1 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00
OP2 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.02 0.01 0.00 0.00 0.00
P 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.01 0.02 0.02 0.00 0.00 0.00 0.00 0.00