sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3OGY-A109-A226
X
>3OGE-A109-A226
X
>1N32-A109-A226
X
>3OHD-A109-A226
X
>3OHC-A109-A226
X
>2VQE-A109-A226
X
>2VQF-A109-A226
X
>2UXC-A109-A226
X
>2UUB-A109-A226
X
>1FJG-A109-A226
X
</seq>
<hsp>
0 1:0.0713449449327
0 2:0.989161885145
0 3:0.384286340644
0 4:0.366987292006
0 5:0.950483013901
0 6:0.784943514148
0 7:0.841619406315
0 8:0.817720993957
0 9:0.754337872804
1 2:0.999996009022
1 3:0.397757787655
1 4:0.374081808914
1 5:0.946800401038
1 6:0.777869507502
1 7:0.85414857966
1 8:0.815090909549
1 9:0.757699312517
2 3:0.743221841471
2 4:0.748437340762
2 5:0.550084967591
2 6:0.36496740461
2 7:0.402849087489
2 8:0.433676239696
2 9:0.459126583788
3 4:0.0513105002461
3 5:0.746264504411
3 6:0.549869913827
3 7:0.583158602531
3 8:0.594122160015
3 9:0.503318272685
4 5:0.744498532583
4 6:0.543091835031
4 7:0.592428795824
4 8:0.592755608818
4 9:0.508211558931
5 6:0.484464517083
5 7:0.289489632085
5 8:0.372059783828
5 9:0.538934665859
6 7:0.417073208961
6 8:0.231580480768
6 9:0.230020605483
7 8:0.339410487112
7 9:0.41984752989
8 9:0.207148879485
</hsp>