sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A1083-A1086
X
>2J01-A1083-A1086
X
>3OI1-A1083-A1086
X
>3F1H-A1153-A1156
X
>3F1F-A1153-A1156
X
>3OHZ-A1083-A1086
X
>3OH5-A1083-A1086
X
>3OHJ-A1083-A1086
X
>3OH7-A1083-A1086
X
>1VQK-01197-01200
X
</seq>
<hsp>
0 1:0.0391138225998
0 2:0.619012112741
0 3:0.99210425729
0 4:0.991982906523
0 5:0.570535415352
0 6:0.348668169155
0 7:0.394360343531
0 8:0.360394636636
0 9:0.442191577298
1 2:0.607406427589
1 3:1.0
1 4:0.999140074718
1 5:0.561352778364
1 6:0.347812708788
1 7:0.387318777662
1 8:0.358188323346
1 9:0.440659167289
2 3:0.751854478294
2 4:0.741393103587
2 5:0.0894418166313
2 6:0.447275522357
2 7:0.362152649811
2 8:0.397191382785
2 9:0.359860658189
3 4:0.0389150013098
3 5:0.735711548287
3 6:0.788126667443
3 7:0.792296990005
3 8:0.754324176074
3 9:0.683731203333
4 5:0.726908864066
4 6:0.785364695789
4 7:0.788335627462
4 8:0.751259733532
4 9:0.681605299821
5 6:0.388123414853
5 7:0.313346777297
5 8:0.345550680987
5 9:0.318961805787
6 7:0.156578649596
6 8:0.107709713288
6 9:0.255533122733
7 8:0.119563575286
7 9:0.178302993423
8 9:0.185878247367
</hsp>