ClaRNA

Doublet Group distance statistics: 53162

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C4 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
N9 A 0, 0.000, 0.004, 0.007, 0.007 max_d=0.007 avg_d=0.004 std_dev=0.004
C8 A 0, 0.000, 0.004, 0.009, 0.009 max_d=0.009 avg_d=0.004 std_dev=0.004
C6 A 0, 0.000, 0.005, 0.009, 0.009 max_d=0.009 avg_d=0.005 std_dev=0.005
C1' A 0, 0.000, 0.005, 0.011, 0.011 max_d=0.011 avg_d=0.005 std_dev=0.005
C5 A 0, 0.000, 0.006, 0.012, 0.012 max_d=0.012 avg_d=0.006 std_dev=0.006
N3 A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
C2' A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
N7 A 0, 0.000, 0.008, 0.015, 0.015 max_d=0.015 avg_d=0.008 std_dev=0.008
N1 A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
C2 A 0, 0.000, 0.012, 0.023, 0.023 max_d=0.023 avg_d=0.012 std_dev=0.012
C4' A 0, 0.000, 0.012, 0.023, 0.023 max_d=0.023 avg_d=0.012 std_dev=0.012
O5' B 0, 0.000, 0.012, 0.024, 0.024 max_d=0.024 avg_d=0.012 std_dev=0.012
OP2 B 0, 0.000, 0.012, 0.024, 0.024 max_d=0.024 avg_d=0.012 std_dev=0.012
O4' A 0, 0.000, 0.014, 0.028, 0.028 max_d=0.028 avg_d=0.014 std_dev=0.014
O2' B 0, 0.000, 0.015, 0.031, 0.031 max_d=0.031 avg_d=0.015 std_dev=0.015
O2' A 0, 0.000, 0.016, 0.032, 0.032 max_d=0.032 avg_d=0.016 std_dev=0.016
P B 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
OP1 A 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
C2' B 0, 0.000, 0.018, 0.036, 0.036 max_d=0.036 avg_d=0.018 std_dev=0.018
N6 A 0, 0.000, 0.018, 0.037, 0.037 max_d=0.037 avg_d=0.018 std_dev=0.018
C3' B 0, 0.000, 0.018, 0.037, 0.037 max_d=0.037 avg_d=0.018 std_dev=0.018
C3' A 0, 0.000, 0.018, 0.037, 0.037 max_d=0.037 avg_d=0.018 std_dev=0.018
C4' B 0, 0.000, 0.021, 0.042, 0.042 max_d=0.042 avg_d=0.021 std_dev=0.021
O4' B 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
O5' A 0, 0.000, 0.023, 0.046, 0.046 max_d=0.046 avg_d=0.023 std_dev=0.023
C5' B 0, 0.000, 0.025, 0.051, 0.051 max_d=0.051 avg_d=0.025 std_dev=0.025
P A 0, 0.000, 0.026, 0.051, 0.051 max_d=0.051 avg_d=0.026 std_dev=0.026
OP1 B 0, 0.000, 0.026, 0.051, 0.051 max_d=0.051 avg_d=0.026 std_dev=0.026
C1' B 0, 0.000, 0.027, 0.054, 0.054 max_d=0.054 avg_d=0.027 std_dev=0.027
O3' B 0, 0.000, 0.028, 0.056, 0.056 max_d=0.056 avg_d=0.028 std_dev=0.028
C5' A 0, 0.000, 0.028, 0.057, 0.057 max_d=0.057 avg_d=0.028 std_dev=0.028
O3' A 0, 0.000, 0.031, 0.062, 0.062 max_d=0.062 avg_d=0.031 std_dev=0.031
O2 B 0, 0.000, 0.032, 0.063, 0.063 max_d=0.063 avg_d=0.032 std_dev=0.032
C2 B 0, 0.000, 0.035, 0.069, 0.069 max_d=0.069 avg_d=0.035 std_dev=0.035
C6 B 0, 0.000, 0.037, 0.074, 0.074 max_d=0.074 avg_d=0.037 std_dev=0.037
N1 B 0, 0.000, 0.038, 0.075, 0.075 max_d=0.075 avg_d=0.038 std_dev=0.038
OP2 A 0, 0.000, 0.039, 0.078, 0.078 max_d=0.078 avg_d=0.039 std_dev=0.039
N3 B 0, 0.000, 0.039, 0.079, 0.079 max_d=0.079 avg_d=0.039 std_dev=0.039
C5 B 0, 0.000, 0.042, 0.085, 0.085 max_d=0.085 avg_d=0.042 std_dev=0.042
C4 B 0, 0.000, 0.046, 0.092, 0.092 max_d=0.092 avg_d=0.046 std_dev=0.046
N4 B 0, 0.000, 0.054, 0.107, 0.107 max_d=0.107 avg_d=0.054 std_dev=0.054

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C2 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.02 0.02 0.02 0.02
C2' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01
C3' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C4 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00
C5 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01
C5' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C8 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01
N1 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.02 0.02
N3 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01
N6 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.01 0.00
N7 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01
N9 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01
O2' 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.02 0.01 0.01
O3' 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.02 0.01 0.01
O4' 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.02 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
OP1 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.02 0.01 0.00 0.01 0.01 0.02 0.02 0.00 0.00 0.00 0.00 0.00
OP2 0.00 0.02 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00
P 0.00 0.02 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.02 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C2 0.01 0.02 0.01 0.01 0.02 0.00 0.02 0.00 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.00 0.01 0.01 0.01 0.01
C2' 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.01 0.00
C3' 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.02 0.00 0.00 0.00 0.00 0.00
C4 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00
C4' 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.01 0.00
C5 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C5' 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.01 0.00 0.00
C6 0.01 0.02 0.01 0.00 0.02 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00
C8 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00
N1 0.01 0.02 0.01 0.01 0.02 0.00 0.02 0.00 0.02 0.02 0.02 0.02 0.02 0.00 0.00 0.00 0.01 0.00 0.01 0.00
N3 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01
N6 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01
N7 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00
N9 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00
O2' 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.03 0.01 0.01 0.01 0.01 0.01
O3' 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.00 0.01 0.01 0.00
O4' 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
O5' 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00
OP1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01
OP2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01
P 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C2 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C3' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C4 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
C5 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C6 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01
N1 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01
N3 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N4 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O2 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00
O2' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O3' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
O5' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
OP1 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
OP2 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
P 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00