sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1H-A1936-A1934
X
>3F1F-A1936-A1934
X
>3OH5-A1858-A1856
X
>3OH7-A1858-A1856
X
>2J01-A1858-A1856
X
>2J03-A1858-A1856
X
>2ZJR-X1807-X1805
X
>3OHJ-A1858-A1856
X
>1SJF-B58-B56
X
</seq>
<hsp>
0 1:0.0663064844579
0 2:0.620950668438
0 3:0.609463841183
0 4:0.617235993828
0 5:0.636023623969
0 6:0.56450310699
0 7:0.618655134784
0 8:0.999991570125
1 2:0.590726117594
1 3:0.577362015499
1 4:0.574329942651
1 5:0.592705624599
1 6:0.537998307499
1 7:0.592445300561
1 8:0.975025657845
2 3:0.0816327133516
2 4:0.291135607276
2 5:0.298312568259
2 6:0.626732406604
2 7:0.473423000472
2 8:0.677091979549
3 4:0.263770135739
3 5:0.27095128048
3 6:0.62935230008
3 7:0.424142197972
3 8:0.654402873604
4 5:0.0360807358303
4 6:0.589258104311
4 7:0.364541241865
4 8:0.586277644797
5 6:0.590056420214
5 7:0.371001592614
5 8:0.569018320947
6 7:0.614850103818
6 8:0.872773846396
7 8:0.56628054508
</hsp>