sequences=18
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3L3C-P28-P27
X
>3G9C-R28-R27
X
>3G8T-Q28-Q27
X
>2H0W-B13-B12
X
>3G9C-S28-S27
X
>3L3C-R28-R27
X
>3G8T-P28-P27
X
>2H0Z-B13-B12
X
>2GCV-B13-B12
X
>2HO7-B13-B12
X
>3L3C-Q28-Q27
X
>2NZ4-R28-R27
X
>2NZ4-S28-S27
X
>2HO6-B13-B12
X
>2H0S-B13-B12
X
>2NZ4-Q28-Q27
X
>2H0X-B13-B12
X
>2GCS-B13-B12
X
</seq>
<hsp>
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0 2:0.518872138407
0 3:0.563638143273
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0 5:0.235505766428
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</hsp>