sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1F-B67-B65
X
>3U5H-52737-52735
X
>3CCS-966-964
X
>3CD6-966-964
X
>3CME-966-964
X
>3I56-966-964
X
>1YJN-966-964
X
>1YJW-966-964
X
>1YIT-966-964
X
>1Q86-B66-B64
X
</seq>
<hsp>
0 1:1.0
0 2:0.358619732395
0 3:0.491800794058
0 4:0.433115598297
0 5:0.652182700703
0 6:0.574862138773
0 7:0.438836635681
0 8:0.62105369246
0 9:0.614664581117
1 2:0.811496051515
1 3:0.795925803946
1 4:0.983357368434
1 5:0.806781556548
1 6:0.784805036598
1 7:0.831561036631
1 8:0.72586722066
1 9:0.744695417982
2 3:0.36490061219
2 4:0.237140273671
2 5:0.353594359667
2 6:0.363958965134
2 7:0.197372699103
2 8:0.360160883209
2 9:0.326859945424
3 4:0.361741396391
3 5:0.43432211746
3 6:0.279526387233
3 7:0.277991482061
3 8:0.269053227335
3 9:0.342293143901
4 5:0.328661184513
4 6:0.336970218304
4 7:0.191116839179
4 8:0.358738644923
4 9:0.329640287264
5 6:0.231429671942
5 7:0.271243546059
5 8:0.226417443382
5 9:0.169550385973
6 7:0.268801596834
6 8:0.198028180216
6 9:0.244121998862
7 8:0.221518038653
7 9:0.194007106997
8 9:0.116098579738
</hsp>